Mark,
I have the same units but was lucky enough to only have to replace the run capacitors 2 years ago. Search online Duo-Therm 10-19-00 for the .pdf service manual. Page 39 gives the troubleshooting steps for the analog control box. To paraphrase, disconnect the six pin connector from the control box to the a/c unit and check with a 115VAC incandescent bulb between pins 5 (white-common wire) and 1 (blue compressor wire). Duo-Therm says if it lights up the circuit is being made and if a component is non-operational, the problem is the rooftop unit. I'd first check that the service manual electrical connector diagram matches what you have; it matches my 1999 Penguin 600 series units.
Dave
1999 Contessa Naples 40'
CAT 3126B