Mick
Welcome to the forum..
To get you started diagnosing the Hydrohot issue, were you provided any of the unit's manuals, such as the Owners, Parts, Shop, and/or Installation?
Do you have any info or repair/maintenance records as to when the last time the Hydrohot was serviced, such as the recommended yearly maintain of new injector nozzle, new fuel filter, combustion chamber clean out & inspection?
You can find HH manuals here on the BAC site or at the manufacturer's website:
http://www.aquahot.com/Library.aspxI think the shop manual has the more detailed trouble shooting section..
Also, when you say the HH control panel has lights illuminated on it, are they all green or red or a combination?
If the Low Temp Cutoff Light stays lit after the unit runs and then shuts down, it implies that the HH is up to temp and domestic hot water (faucet) is not being used. The HH unit is ready to also supply interior heat.
Do any of the interior heat zones work when you set the wall thermostat to a higher than room ambient temp? Try the furnace and turn up 1 or both of the wall thermostats so they call for interior heat. Also, When one of the wall therms calls for interior heat, what control panel lights change? If interior heat also fails, then the issue is not with the domestic hot water part of the HH only. If interior heat works good, then the issue might be with the domestic hot water tempering valve.