Eric, thank you for the suggestions.
1) I have checked the battery cables a few times, and studied photos I took before taking them out. Positive, negative cables, and three wires going to the negative are per the photos.
2) Regarding the power feed, I have a one fuse block next to the chassis batteries which hold five fuses and one relay for the cooling fan. All blade type fuses test for contiunity. I have taken a fuse out and checked the pad, it does not have power, therefore, this test indicates the pad is receiving power from the fuse block.
3) Dedicated ground wires, I assume theses are the three wires that are connected to the negative battery post. I have not seen any others.
4) Transmission relay box, I am not sure were this is? I will need to revise the battery area for search.
5) My forward electrical bay has two boxes, one for leveling and one for the smart wheel. I have checked the solenoid and it tests for power properly with key off and key on. Also checked the buss bars, all contact test for 12 volts. I have considered installing a back up solenoid for testing purposes.
6) I do have a black Allison box under the shift pad, is this the transmission relay box you referenced. It has two 10 amp blade fuses, they check for continuity. I have tested them by puling the fuses and the pad does not have power. Therefore, I know that are connecting. Dave, thank you for your suggestion regarding the back box.
7) I considered crawling under to check transmission connections. Unfortunately, all my air is depleted and it's really setting low. I'm not sure I can get to the harness. Also, since it started before I ruled this out as a cause.
I have turned both battery bank switchs on and off, pulled fuses and powered the batteries on, reinstalled fuses and powered up hoping to re-boot the trans pad....without luck. I am tankful I am not at a rest stop, on the road, or at a camp site with an issue like this, its really frusrating!
Yesterday I spoke to Allison and they suggested holding down the two arrow tabs at the same time for 12 seconds to reset codes, I had tried this a few days ago without luck; and tried again with him on the phone, no luck. He recommended that I have a tech hook up a laptop and re-flash the system. After many calls to Allison centers, I found one that will do field service. So, I won't have to have the unit towed. Unfortunately, they are 250 miles round trip away and charge by the mile; about $750, along with $190 an hour for the diagnostic time.
Additionally, I unhooked all connections going to the trans pad and re-connected them with no change.
One thing that is haunting me, when I pulled out of my barn the Beaver only ran for around 10 - 15 minutes, I moved forward and backward a few feet several times to try and level it the best that I could. I am wondering if this quick forward / reverse and limited run time may have not allowed significant time for the transmission to communicate neutral?
I am going to go through the above steps a few more times to assure no potential issue was missed. Along with studying the Allison diagnostic manual 23XX code section again (thanks for the suggestion Eric). If no luck, I'll have the Allison tech pay me a visit.