Besides the heavy load issue Joel mentioned, the batteries themselves can be an issue. If you have one battery with a bad cell it will continue to call for heavy current and can destroy an alternator. You should check the tightness of the connections and look for any copper corrosion at the alternator, at the isolator if you have one, the heavy duty fuses in the battery bay, and the battery connections. If all of the larger wiring is clean of corrosion and secure then beyond that point things are well fused at lower current levels. A loose connection, ground or otherwise can allow the alternator output to float up voltage wise which can then take out a diode.
So the bottom line is if the batteries are all good, and the conenctions are all good, no fuse or breaker has given you any evidence of tripping then just chaulk the fail up to some component in the alternator giving up the ghost (most likely a diode or regulator) and taking out the rest of it. The alternator was three years old, not a long life, but the diesel pusher configuration is hard on alternators given they are air cooled and the air stream is hot to begin being mounted aft of the exhaust manifolds. Also, my sense of it, is that the air flow used to cool the alternator is also being pushed against the normal air flow through the engine compartment. Probably the best thing you can do to extend the life of the alternator is to manage the current demand to keep it on the low side, especially when it is hot out or you expect excessive engine heating like climbing a pass. The alternator was really designed to fit in the fan wash on the front of an engine with plenty of air flow.
We should not be too surprised when an alternator goes to its final resting place given it was not really designed for this configuration....
Later Ed