Steve,
If you are mechanically inclined and you have time and a helper, you can buy the seal kits and replace them yourself. If the windows are not fogging, the seal creep is only cosmetic but if it starts to fog, the seal needs replacement because moisture is between the glass layers and it will etch the glass and require glass replacement. All SMC era coaches have window seal issues to some extent, especially with a lot of altitude changes, but it is mostly cosmetic and you need to decide if it is worth the time and money to repair.
Doug,
All 2004 Beaver coaches, including your Marquis, have dual pane windows everywhere with the exception of the windshield.
Gerald